Bacterial genome sequencing in clinical microbiology: a pathogen-oriented review
نویسندگان
چکیده
منابع مشابه
Whole genome sequencing in clinical and public health microbiology
Genomics and whole genome sequencing (WGS) have the capacity to greatly enhance knowledge and understanding of infectious diseases and clinical microbiology.The growth and availability of bench-top WGS analysers has facilitated the feasibility of genomics in clinical and public health microbiology.Given current resource and infrastructure limitations, WGS is most applicable to use in public hea...
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IMPORTANCE The latest generation of benchtop DNA sequencing platforms can provide an accurate whole-genome sequence (WGS) for a broad range of bacteria in less than a day. These could be used to more effectively contain the spread of multidrug-resistant pathogens. OBJECTIVE To compare WGS with standard clinical microbiology practice for the investigation of nosocomial outbreaks caused by mult...
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Recently genetic studies have been revolutionized by next generation sequencing (NGS) technology, and it is expected that the use of this technology will largely eliminate defects in the methods of association studies. The NGS technology is becoming the premier tool in genetics. However, at the moment the use of this method is limited especially in the livestock due to high cost and computation...
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Since the first bacterial genome, Haemophilus influenzae, was fully sequenced in 1995, over 1000 complete bacterial genome sequences have been determined. DNA sequencing technology has dramatically improved from the first generation, automated Sanger DNA sequencing, which dominated this field for almost two decades, to the current Nextgeneration sequencing protocols. This newer technology drama...
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INTRODUCTION The completion of the first draft of the Human Genome Project in 2001, and subsequent refinements since then, have stimulated an explosion of research about the human genome, the inherent variability of DNA sequences among humans, and the relationship of sequence variation to human health. The scientific impact of this research in understanding the pathophysiology of disease and in...
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ژورنال
عنوان ژورنال: European Journal of Clinical Microbiology & Infectious Diseases
سال: 2017
ISSN: 0934-9723,1435-4373
DOI: 10.1007/s10096-017-3024-6